Scaffold Ga0099793_10007943

Overview

Basic Information

• Taxon OID: 3300007258
• Scaffold ID: Ga0099793_10007943
• Source Dataset Name: Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3988
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: Eel River Critical Zone Observatory, California, USA
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F044929	Metagenome / Metatranscriptome	153	Y
F047513	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099793_100079434	F044929	GGAGG	MKRALYLASGISVLFTTLAFGHIMVHDTAHIMSHHDGSAVFLIVHTILAVAFGVLSLIGAYFLLTGWRRPSSN*
Ga0099793_100079436	F000188	GGAG	MSVKPELAFDVCWEVYRGAREVLEAKRGMSAMDWKEATKFLWRPDFRPRLAEWVADFALAGQAALEGPDCASRMVLFRLYYLGLAPYENTRHFLGLSEQSWVTWSEEVRRRVGKELLRRGMFPPRKYFSNVA*
Ga0099793_100079439	F047513	N/A	MLPREGSLNYKTEPPWEFLLSASRNSLQSYELSRLSHAANLRKEIAQLLDSWLEENTAAMLARWLMEEREHSTPARQSSERPAAKDEGAAGLDARSKAAHAASDNFFADRPGARPEFRSRS*