Scaffold Ga0099793_10002977

Overview

Basic Information

• Taxon OID: 3300007258
• Scaffold ID: Ga0099793_10002977
• Source Dataset Name: Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5777
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: Eel River Critical Zone Observatory, California, USA
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006340	Metagenome / Metatranscriptome	375	Y
F007853	Metagenome	343	Y
F015711	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099793_100029774	F007853	N/A	VVQQFLIPYQIISYVKRIPSLSETSPVEQELLESKLEKALDDAWSKVNVALDKTSKSSPDVALGIWFAAEAVEYSSLLFNLTYGLEDLQPAVKIRKGEVALVLLKDSIEFLKRAREGRRKSATDAYVNLRTAADYLKAAHLDQVKKSTKKRG*
Ga0099793_100029775	F015711	N/A	MKSTDSQKTHGHSNLLRSLVLGVIVLVSAWSAVAYFHVASLQEYVTNIIKPADSLLRITLIVTFGGFISSIPILRSLARKDKTPQVKVQPIPQYRSPQVHPLFMTSRPARDASFVIRKTKNRGRISRNRDGERLPPSHPE*
Ga0099793_100029776	F006340	GAG	MGGTNLPGVRGTSTSRYVALVAALTALFTAYGYVSSIELRSVTRSLDLFFLLPAFFAILVSLTGKKWGGTILGTVIGLIFLGTPSAAGNFSPHITASLVVNGLVFDLYLQHSGGSLLDPSRKHLVLAGALGNLAMAPTGLLVLQAVWGPSSALIWAIALIGDTLVGSAGAFFGTIVVERVKGVQARRVLEAKSAVRVRV*