Scaffold Ga0099793_10002041

Overview

Basic Information

• Taxon OID: 3300007258
• Scaffold ID: Ga0099793_10002041
• Source Dataset Name: Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6647
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: Eel River Critical Zone Observatory, California, USA
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003181	Metagenome / Metatranscriptome	502	Y
F005263	Metagenome / Metatranscriptome	406	Y
F016256	Metagenome / Metatranscriptome	248	N
F025944	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099793_100020412	F005263	N/A	LARLTRRTFAIEPDVSEKIDALVDGHTLEANLLVNKALRRYIEWGRFVENFKLVTSDPRLMKLFWSHLTVEEAREMGLQNGNSVVVEFILYYFRKFDLESLLKTFRVIGAEYSNAFVYSESGDDRNRTIILRHSMGRSASAYYGASLKALSSRLGMGVETEESDDQLVCKIRPVDNEQKVAAKTLKS*
Ga0099793_100020413	F025944	GGCGG	VSHSTTEESHHSYREMPTYVKIIVLAQATTILSLTLVMYQVYLNDVSFQQYVISLFQSNIIADATLSIVTASVFALGTFTLLGSMSSNRRVNKEWSHLSERAKAPQMPSLPILETVKRPSRPRNVSRRPRTRKPRADVDNLYDSIRYFADDRRQE*
Ga0099793_100020414	F003181	N/A	MRLDQGSTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNKLYMVDRALYTNTPGLPFYMEFTPQNMKSIKTPLIISEVKLYTVERVWGMRTLRITR*
Ga0099793_100020418	F016256	AGG	LRLRRFFRNKRGIDTIIAEVLMILIVVIASVMVYAYATGLFGAIATPQKVATESISLEYWSFSNSSVVNLSIRDIGTTPITLKSYYVNDYTGNQYTRANWATGSYPGPTFQPTSWANATILISSACSNSCTQSGTPYVFQSGYPYTIILVTATNEQFSFMITR*