Scaffold Ga0099793_10000677

Overview

Basic Information

• Taxon OID: 3300007258
• Scaffold ID: Ga0099793_10000677
• Source Dataset Name: Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9752
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: Eel River Critical Zone Observatory, California, USA
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004426	Metagenome	438	N
F014601	Metagenome / Metatranscriptome	261	Y
F025249	Metagenome	202	Y
F100464	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099793_1000067715	F100464	N/A	VSVPAPVGVNVTEQFPANRLQLVAGLNEPPAVPDEVNLTCPVGVLAVPLAISVNVAVHVEPLFVTTDDGAQLTTVEVERPITVSVNDWLPVLVLKVCFVSPL*
Ga0099793_100006772	F014601	AGGA	MTGSTGNTGRPSPIPRAVLAGILAGIAAAVISYYVINSILGLIIGFIAGATVGSRTVLLMHKAREQDQ*
Ga0099793_100006774	F025249	GGA	MSSLDSWFNALASENKDGSSGSGARTPPPSVFGIIVVGLLAGLVVGLVVGPNFTLQGFFLGFAGGALITAGLYFYSSERGRPPR*
Ga0099793_100006779	F004426	N/A	VDDELRVSTHKSIIKTLGRQYTDAAQFFVELVVNSWMWGEATKVEIRIPESGSTIEYEEWGNGMDLTGLREFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGKDLELQVHKGRFDRTITLTESLIDKHWDETDQSTWRPLRLIQAPLDHDGLRIRIRSLTKKPDPVDVRRALLARANVLALRGYGPFEVSVNGELVKPEELRGSTLLPVNIPTEYGKITGEIMIMPISKVRAGISEAGISVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNDFEHDSVQWRVFEKAMRGFARNRVHKFLKQTASRRELRSIQYLNREIAERLRRSLRRNVQILSRALVNPRVSPKVKNVPGKTRKEIVLGERRHRKGKKHSREATRSVIHLKDQILAFDVAHGGDRGQAYVETDKSGVRTVFVNMDHPMWYVEAGMTPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDALYNDALT*