Scaffold Ga0099791_10026854

Overview

Basic Information

• Taxon OID: 3300007255
• Scaffold ID: Ga0099791_10026854
• Source Dataset Name: Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2504
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: Eel River Critical Zone Observatory, California, USA
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025710	Metagenome / Metatranscriptome	200	Y
F028766	Metagenome / Metatranscriptome	190	Y
F034586	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099791_100268544	F028766	N/A	VTNPYVAKTEALLREGKAMLERRSLVMRAPTPAFSALARRRKLMKIEARFADVSRRFELLRTAGTEGVADLKVGLEKAFDAFRTEIGWKP*
Ga0099791_100268545	F034586	GAG	LEAVTGAADHQYRWWLLDGDLDIVSDGSVGGATLLAALADVSQELRRLSDSGTHPVNHPYRLIVYKGASVVAVRPASIGIC*
Ga0099791_100268547	F025710	GAG	MKDMTEKQAQAEAFRRWGATGTIKFRTSSANKIQRGRLARYCCTVSSCQMRSLYFVEGQGNTWREAFADARAR*