Scaffold Ga0099791_10001593

Overview

Basic Information

• Taxon OID: 3300007255
• Scaffold ID: Ga0099791_10001593
• Source Dataset Name: Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8991
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: Eel River Critical Zone Observatory, California, USA
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021259	Metagenome / Metatranscriptome	219	Y
F023285	Metagenome	210	Y
F026234	Metagenome	198	Y
F039971	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099791_1000159310	F039971	GGAG	MRIVAWLLVAAGLVVTGIGVAAALGQAGSGAQPWGNELSDNFVFSKALPFVLGFGVAVGLVMASTYGAKTRSDGAVRRWSPGTVFGHWVLTLGFVLALPTGMWQYLGGILDVNLPIPLYLFYRVHYIGAGIVLFAVAAFVSYLWMTGDRSLLIRRGEWSRHLLGLAYELPRSVRGPYAKLLRIDLSRPRPPMGKFTFYEKVVELPSWSILLALITVTGLIKAGRYLIPVPGFVLWLASTLHVAAMVAIVIKLLDHLRYTFPRWSLMGAITTTWMKEQAPARRQGASEPSGSSATGIAGGGDT*
Ga0099791_100015934	F026234	N/A	VADGSHSALSGQTSGGESPLLVSTIVCAYTQAELPTPWLAIFHRFERTMHKAGLRIRVRLFPLEELPGAFEVLVVPPELQAAAQALQTGARIIVTSRAEAPAAADLLLREIERGETLYAEKVRPGEPKIMTHRGGDIL*
Ga0099791_100015935	F023285	GGCGG	VSQDLLARLRRVEQQIRAFKQLHESELQLILDELTDIANQVDEPSAAEKPRAARADDADPAASSPKRAKWLAEQEKKAGPKSRRELLFGEREEK*
Ga0099791_100015939	F021259	GGGGG	MRRLVALLGLVWSLANLGVAYFFLTGAFVAKTAAKEGILAQLSLLLGGVLIAGFAILLARECVRLLTSADASETA*