Scaffold Ga0099791_10001306

Overview

Basic Information

• Taxon OID: 3300007255
• Scaffold ID: Ga0099791_10001306
• Source Dataset Name: Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9750
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: Eel River Critical Zone Observatory, California, USA
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003528	Metagenome / Metatranscriptome	481	Y
F004353	Metagenome / Metatranscriptome	442	Y
F068072	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099791_100013064	F068072	N/A	LKFHVQTRLHPTAADALDALPKGTVLEVRMLDSIDSAVDHDGAEFHGTLAAPLVLGGEVIIRSDSEVRGLLVLLRSKSHPEGFRYELLVTGLTDRGKSYDLTASLNPSFVDPAAQPAPESKSATK*
Ga0099791_100013065	F004353	AGGAGG	MRNVGRVFFTALAGLTLVVAVWAFSPPTAHDAALLSLSNNQAAAPEQSVSGKIASVEKNSFTLTVGQSQTSTAGQNVLQDSASPKTMVFQLDKNTAIEGSLKVGASADVTYRQEKGTNIAISVRVTP*
Ga0099791_100013069	F003528	AGGAGG	MAGKVLLAQDAAYDILILDADGQHLALESFKDLDTARRRLPALAAQYPGTKVAVWNRNTRTILAETDGY*