Scaffold Ga0075469_10017065

Overview

Basic Information

• Taxon OID: 3300007231
• Scaffold ID: Ga0075469_10017065
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2526
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001319	Metagenome / Metatranscriptome	723	Y
F003592	Metagenome / Metatranscriptome	478	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075469_100170651	F003592	GAGG	MRFKKYYKDILSLVASLSLLASVYFANHYDIKQLYREFVGLRLKVQVQEKLIDSLEDRVNLLSDQNQELLIDLAEHNETRGKENSMLLERLQDLEYKIEVMSMKSTISSNGKVFNDRFEFTDKQVNRVGQYETNGQVLVAWKDDYLVTKKVNVNTIGELNLVPKIEKLDKDEFVSYIDD
Ga0075469_100170652	F001319	N/A	LELIFKEKKMKKLWSVILLIGLVNAQMPQPTLVGQDELQIPTLSINNFVNQAEIEGLEDTRVFLGITNILNENVMDSRYDLVEQDSDFEITARVIYLGRPRTSTTFLGLFRRETTTTEVRVVVELKNKKTGQVVSGNGTGTIDRDISSTGFQINEELPFDRSELGGALKEAIGNAVQEIL