Scaffold Ga0075468_10075802

Overview

Basic Information

• Taxon OID: 3300007229
• Scaffold ID: Ga0075468_10075802
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1098
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004163	Metagenome	450	Y
F012625	Metagenome	279	Y
F022314	Metagenome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075468_100758022	F012625	GAG	MDPLHNKTISVGDLVKEHTYHSKKRIGLVHEIISNYYLVVKWLDGSSDYPHYRHRNKYEVTKVIDGETYPNYLQDYIQGKRW*
Ga0075468_100758023	F022314	AGG	MVKTREDLKLGDMVRLVRHEPPEDAWHDFSKESQDMMGVGLVVSIQELNGYKDVPQKKWVEYTILWSGIGEQLKHLGFDLIKITGAEI*
Ga0075468_100758024	F004163	AGGAG	MKQTIEQLKRMVLDMKHYFEKSLPLILIGVALGYTFANHLEAQTPKEIGFATVEDMSFLVQELKDCRDNSGSLDGSY*