Scaffold Ga0075468_10013246

Overview

Basic Information

• Taxon OID: 3300007229
• Scaffold ID: Ga0075468_10013246
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3171
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033250	Metagenome	178	N
F070658	Metagenome	123	N
F080627	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075468_100132462	F033250	AGGAGG	MDIDLSTRRELSPIFEAGGQLDLEVLRPVLEQHAAAMIEDARTGWPVDTGISKAAWKAEIGMSSTELFVSLINEARQRGRGYSVYIHEPRSPRLVYTHTQERLTLNLIPALQADIAVTIYESMRG*
Ga0075468_100132463	F070658	N/A	MSVDLDIELRSVTRHLRREHGSLRSLSAGELVVLIAGGQSILVQLRDNWPVVTGRSRAGWDVAPVTRGFIGYKVRNNVDYSQYVHRRGEGPDPLWQEQMIIIRDVILPPIVERLNATISETERYSQPAPEPQRPMFLSTPRQQTIGLFSQVRRLRRLVRRR*
Ga0075468_100132464	F080627	AGG	VTYATALTAAIARLTAAGLVECRSPNGLLGAGAPRGHRSVACLPAGDRKQRSREAARADGLRVTARYTIQLGHELKPGAGLAAPAQALQDLHSAQRYLIQPGTSLTNEGALTFGPVTTTRLQGGAYMLQSFELGITFNLDMSAP*