Scaffold Ga0075468_10007362

Overview

Basic Information

• Taxon OID: 3300007229
• Scaffold ID: Ga0075468_10007362
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4465
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F010275	Metagenome / Metatranscriptome	306	Y
F071638	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075468_100073621	F010275	AGGAG	MSNENNDVIMDNMRDNVHKLWVIEGRPDLEDDCLQYCYENIHTPVPLAMIEFLSQHCSQALSSQDLEHMEKGE*
Ga0075468_100073623	F002593	N/A	MEIVNMSKLIYSRNGSATTESIDNASPTVRAIWNQAHRFGANIVRVRAEKNRFGTDTGRTFNSFHHGKVSVYKQKDQVHESNALYFARKIPLTKVNKGMQILEIASSLDVQDTLDTVDAIQYYSETSFLGRLWNRIRYGTPMSITS*
Ga0075468_100073626	F071638	AGGAG	MSNKIDIKKFNSNEKAKRYISELGFSLKDRHCFKEDRSFLYTKKFSKQQVYLRSTFDYLNDNTIEMGTVWTVQVF*