Scaffold Ga0075468_10001150

Overview

Basic Information

• Taxon OID: 3300007229
• Scaffold ID: Ga0075468_10001150
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11064
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000379	Metagenome / Metatranscriptome	1211	Y
F034397	Metagenome / Metatranscriptome	175	Y
F077938	Metagenome	117	N
F098216	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075468_1000115018	F077938	AGGAG	MTLKEILERIENIQSQLAEDNTAGALDDINRLEDDLIVAVEKPQPMTPQEEDRNAGIKRNADGSVDSEETNTPTKRNDFGLPIIDARDHHLIKKNPKKLIG*
Ga0075468_1000115029	F098216	N/A	MVAGITLAITQTSETQDRVKFCEQYLLVAEHLNKTHRITSYMKSVGVEGVLETNHCQTKKGRI*
Ga0075468_1000115032	F034397	AGGAGG	MGTRLADIVFDRNDDFLYEDDRAMKLTPYVMAERCLQVEMSNIYKDYKSA
Ga0075468_100011507	F000379	N/A	MNKGVDMIRKTQGKIDYSIKHGIMIGYIDGCQNVSAIETGWTQTSPEQIAKTLLEKFPTKEDAIKAVDSPVMFPTFKKDDYCYVDEFGDVIESNLSWNKDVMRKHIGHLFLFMKGTWQYSDNGIDWEPAVEALKIPTEGVA*