Scaffold Ga0104054_100016

Overview

Basic Information

• Taxon OID: 3300007220
• Scaffold ID: Ga0104054_100016
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764305738
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 234807
• Total Scaffold Genes: 231
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 217 (93.94%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103435	Metagenome	101	N
F105379	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104054_100016127	F081455	AGGAG	MENFLTKEISALISKHFEFTNNSDLIKDPIISDDNIIDIPPAEEIGAEKVNMSDIIDCVQEALQQPLENKDSSIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSTFNPECNPNKRLRYELIRHQGREKYLVIRLSTVVNGTTKYYADIYPDLNKIDLDHHLISSAKK*
Ga0104054_100016128	F080166	N/A	VNILANFENYNKVVEQIFELNYYLTFKLEVTFNTIHKKINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTVIEEAINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAITPLLGSNRQNMLR*
Ga0104054_100016131	F099453	AGGAGG	MNRFDVIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYREEVELKCVKQSCQWILDNIQYIRSLGLVVIPEVYQARLANLGNIIYTPKYPIAIAMAKLEYMLGKKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA*
Ga0104054_100016150	F092229	AGGAG	MNKEYRFNHIPEVVLRNIRFIRDNNIDIGTGDDVLECMMDINPIVRTKIYDDYEFAKDVAERRFGSTIEKLDLRTVLQKCITRPYNSILNNIYFRYFNSELIDDLFKLGQSSKVLDLAIKYECEYYTVNAAKTNIRRYNTDAYYNKFAADSNIISSHRSLHDPQVNAVKSAEFTYDLLVASRAEEFNPEIVREIFVKYGLKPNSSRNLYNRINDNLNLFYYIEDYLDEYREEGRFIYGTKEYKILKELRSLPLMVVLTQLTRKNDSGYILNSNLELVKG*
Ga0104054_10001617	F099452	AGG	MDKTYAALLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELILSSMNIFNLYKEIVDLDDVSLLNDLRKTPWYKDWFIDDKRNSDLIDLSRFNFNSLARFEKEEYLRNVERYDFEAVNPVDGYGLFDTLTKDNDVELFKLAAENILINHGFFNKTDYNFCDVPNEYMGDKEVSVYMCLLNIENMIFVDKKTLDTTILYNIVKDHICGFIYFTLFDRLNKDTRTRAM*
Ga0104054_100016174	F105379	AGGAGG	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLDKITQLQPSKENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINIGGYMIDIPKSAMPTLKSDHVVATVYNAPNKNFNILRFKITKRNGIIVNQSMLFLPY*
Ga0104054_100016179	F095629	AGGAG	MRELIICVCLLGCFSIANANNIEQPKEVKIVHNDDSVILHKKIYQLEKRIERLEELLKKEGK*
Ga0104054_100016198	F092232	GGAGG	MNTQAKFIAEYNDKNRPKFNDKFFNKSDDDIIEDLKDVILSCERNKFYTIKVLNFEVIDDYNEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTASSAKTQSITLKTNSNAVKMLRNFIDLNTTNEETVRAAMFSVYLFDHKVTLFEYYLARFGWYETLDKFNFEDVIKISDHDLNDPEYYTFAIANAHMKTPFYISAVKSFMDNDRILQSFVASFARAISLYATKKTTLDQIYTTEFWICKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASTKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTQPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDENFSKMLNIYREEKGYTSAIMLADDAGLELTDTRDPAAVAFDADLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV*
Ga0104054_10001660	F089057	GGAGG	MINVIPLIAKKYNRKGDTSGSLKSLIDDLNCIGDTDDVLLFLTSIPRETKYSLAEAFSVIVSNDEYRNIFRTSIVFLNIDLDYHELLLTAIKSESYDIICMINKAIPTPDLFLAKNNYECLTIALDKSYTVFDKILGMVVSQIRHTASSKEGRALGIFMTLCILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAMDAFQYMSEEDIHTVVDDINSRSVLSRYLNNM*
Ga0104054_10001668	F103435	GGGGG	MKFVFTTEPIYQYYRAYLYPSDKDKLDKDLMVEYGDYKDYWDLKNQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYSYLIDNPEFENIFSEILFNQSEEEFYEFYKAIDRFYNGSEIFIIVSNDEYSDMVTQMMCNVIRRMYGIHPQVIYDIDDILSIRDDIDFSPQGAQLAYLQRSAYYKLEAKRSLEPLQIWYPFDMNTYTNALE*
Ga0104054_10001698	F095631	GGAGG	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYMGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELILNTVSDTFKFDRNIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYTTYHKTIITTNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGINNFCNYTYIDSSTIRVMFDNSSYLPTANTEVTVNLYTCQGSNGNISYKDSIYFRVKSEKINYDRLNLLVIPTSDAQYGIDKRSIADLKKLIPKEALSRGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASVAYQSSEEELNNARRNQFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFVANKMNWYRHYLSERDTYVGDISIMQNIQSDIGLVHRDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQNTFIMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMNMKIFVFAKDVFGYNAGLHKTDQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKIRKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILECLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLTEYIKNDIRKYIEDKSRISDIHIPNIITYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*