Scaffold Ga0103961_1208109

Overview

Basic Information

• Taxon OID: 3300007216
• Scaffold ID: Ga0103961_1208109
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface and Bottom layer) 16 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3149
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.409238
  • Long. (^o): 103.907928

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F042880	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103961_120810911	F002827	GGAG	MNKEYYQAKADLCRDLFIKQVGEGDSKEAGANLIRMVNALNQINLINYKEEKEGNA*
Ga0103961_120810914	F005146	AGGAGG	MKPVNFYEVQDRKGEVAWGGASATEAVEWFRRGLDNSIYVSVWDEEDIEEPKLVIDKIDITKLVLTTIVSERGRA*
Ga0103961_12081097	F042880	GAG	MANYTTVGELIEHLKGEDSNAPIIYQYYLAEHFEISEEVFGQVAREFDSLIPCSDSYEVISGEINNKREEANG*