NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103961_1161053

Scaffold Ga0103961_1161053


Overview

Basic Information
Taxon OID3300007216 Open in IMG/M
Scaffold IDGa0103961_1161053 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface and Bottom layer) 16 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1518
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.409238Long. (o)103.907928Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F010817Metagenome / Metatranscriptome298Y
F016772Metagenome / Metatranscriptome244Y
F091423Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0103961_11610531F010817AGGAGLNKFASILVLNFFLVGCATITPDKIQDSTASYDASTPSNYNKDNGGLIALLDHGALITASAKDRYNNLIKMYKIKFKKEKAIELVENAGITPYKDRYGNDLFLIDNEHLVYFGVMNSWLKEKVPAD
Ga0103961_11610532F091423AGAAGVTEFIGAVVRLVGGIFEAINNVFGAKNTKEMKERQQAQKEVDHQSGIEKAVKEKDLEQIRKHIGS*
Ga0103961_11610533F016772N/AMNKLNLIAIALMGIFITSCSTTNTGGGDQVGETTDVENALPYIKPAVILVCTVVLEQALSPEDRVEKAKMINNIATVVQALTVGQTPTPDQLQKALSDHLPAEKTHWAKYIVAVKDIYAAQFAKLNGDAALAVKVLNAIASGCKDATEEYVE*
Ga0103961_11610534F009669N/AMKNMLSKLFGPNWRSSTSGIITVVSVATAFAIHNDNSLVAFLPDHIENYVLGISKLVAVVAGIIFALSVKDSHVTGGDIPQTVEAKNRIQKIEKNLAEKAGKKNI*
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