Scaffold Ga0103961_1024937

Overview

Basic Information

• Taxon OID: 3300007216
• Scaffold ID: Ga0103961_1024937
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface and Bottom layer) 16 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11254
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.409238
  • Long. (^o): 103.907928

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003304	Metagenome	494	N
F011753	Metagenome / Metatranscriptome	287	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103961_10249374	F003304	AGGA	MKKAVVTQSFGDGWAKIRELTQPRMKAYCERHGQDYISMEKPLAEPQQYTKSAIGNIMATRGYDVVTFFDCDVLIAQDCPDLTIDAGVFSAFDEGAYLDRRKDMVKLAETYGAAIKPKFYVNTGVFVISSKVIGVLSLPPLGLFPNHFAEQTWLNIQLHLWSIATCNLDPVYNCMTSVESHFGLDRYKDASIIHYAGQSADMDKLAKTIAEDDAKWKDMGR*
Ga0103961_10249378	F011753	N/A	MRGIGDAIIDLKNRKVNPRYSPFYDTDTAQIYAYIAACENPKAAGVSVVLASNDPELIKHRVWDKEELHQAGIAFQAMLKVWSWAKQYVPPGMKL*