NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103959_1235488

Scaffold Ga0103959_1235488


Overview

Basic Information
Taxon OID3300007214 Open in IMG/M
Scaffold IDGa0103959_1235488 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE), The Singapore Centre on Environmental Life Sciences Engineering
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1995
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.409238Long. (o)103.907928Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035220Metagenome / Metatranscriptome172N
F054788Metagenome / Metatranscriptome139Y
F060847Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0103959_12354881F035220N/AVCGIPLVQDYYVPAGTIYLLHIPSLAWVDAKDWGFVEFEGAGPWRWLSGRDAFETTYGWYGNLACLARNAHGSITGYTDTARYTHVA*
Ga0103959_12354883F060847GGAGGVPVLLNSAGQPEPPTAVVARLRALHAGLSLKFLTHTGEHWAVCMAWSPEDRRWERVQQGETDPASAYDIIGYLPVDCPTDEAPAYLERTFRQYPKDEIRQMADYVQQYNADAPVSAAVEEALTEALESPVLPKKRGRPKKVS*
Ga0103959_12354884F054788GGAVAVTKAQLIALTRETMDAVDSTRWSDASITAVMNNVYGDEWSNILNAQPYYTFAKRTVTTDNNGQIAFSALSSGAGDSQQNFYRILSVSDGNVLYNQTRFQDVPLATTTNYLPTYPRLYYTAGQQVQILPVSPSQTLYIYVNYKPTPFNQLAGDASTIDFPDGGEIILANEAGAMLLNKGGAESVAAQVLRQQAAMNRQTLLDDLRRYTINPTMMAYPDQKYDWSGG*
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