Scaffold Ga0103959_1193900

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103959_1193900

Scaffold Ga0103959_1193900

Overview

Basic Information
Taxon OID	3300007214 Open in IMG/M
Scaffold ID	Ga0103959_1193900 Open in IMG/M
Source Dataset Name	Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projects
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE), The Singapore Centre on Environmental Life Sciences Engineering
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1133
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.409238	Long. (^o)	103.907928	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023360	Metagenome / Metatranscriptome	210	Y
F057213	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103959_11939001	F057213	N/A	ARTSSNRSGGNAQPVDVDNTESRMGREVVNDNTDLREQFARLQRDLASKERALRQKELDTEILRTMGDRFDNDLQDYALQKVKSNIQWKRDGSYTIVNSKGQERYGLDGNPLTIQGLIEEVAKGNPKLLKQNNLSSGSGLKPGQSQFAGAPTDAIPDYSKDPAAFEAWAQRMGLGRGVGLKGLKVGASISTSTKKIL*
Ga0103959_11939002	F023360	AGGAG	MAYVLDGTANEGDGFTFAIANFALRAMHEASGLVDMTTVVAPNQGNQYLVPLFAPITYQDYAPNAAPGTSTSPGTGFGAAAGAANEQTPSLGQQTITATPAVAATAFDYFYNWTTSFDLAATLGAELGESYAEKVDQRVCAAFSAANGFKATPGNSNYSPTPLDGFARPT

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