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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007214 Open in IMG/M |
| Scaffold ID | Ga0103959_1166413 Open in IMG/M |
| Source Dataset Name | Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projects |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE), The Singapore Centre on Environmental Life Sciences Engineering |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3994 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (15.38%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Singapore | |||||||
| Coordinates | Lat. (o) | 1.409238 | Long. (o) | 103.907928 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003687 | Metagenome / Metatranscriptome | 473 | Y |
| F015587 | Metagenome | 253 | Y |
| F021097 | Metagenome | 220 | Y |
| F035274 | Metagenome | 172 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0103959_11664133 | F035274 | N/A | MITIGKEDLDRPIEIFKIDDYYISFDENVVYLHWVAFTEQACEYIDAFYECLDVLIDGQWVDTYGSHEQGNPVSLPDQGYIACRYILATN* |
| Ga0103959_11664134 | F003687 | GGA | MTPKAVEQLLTQDARLLARRDAPVIDQELEEQRQAALEIFFQWQDGMREFQDLMPFCVVLQRKVDLNRDLLRWERRHED* |
| Ga0103959_11664135 | F021097 | AGG | MQRNEFADACVAIVLGAGFGLLLSVGAQKVLNRHYKATCQNQPGHNLIYTKGFLGDTYYCINSKYMN* |
| Ga0103959_11664136 | F015587 | N/A | MSKFNIRKNTAQLLLATATAVENAKLPTKAGIGEKLNEYRTRAAALIMPNDMAFVIQPKQGN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |