Basic Information | |
---|---|
Taxon OID | 3300007214 Open in IMG/M |
Scaffold ID | Ga0103959_1149849 Open in IMG/M |
Source Dataset Name | Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projects |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE), The Singapore Centre on Environmental Life Sciences Engineering |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 8020 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (70.59%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle) |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.409238 | Long. (o) | 103.907928 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001459 | Metagenome / Metatranscriptome | 690 | Y |
F003112 | Metagenome / Metatranscriptome | 506 | N |
F004760 | Metagenome / Metatranscriptome | 424 | N |
F039992 | Metagenome / Metatranscriptome | 162 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0103959_114984914 | F003112 | GGAG | MWKRLATWLTSLSLRLLMTPAEFACFQEALKFATENNLMAKETKYIGKVKHLLSVNRSIKRIVEEGRNRDEVTEAVVHLAVALKYLEGRGRE* |
Ga0103959_114984915 | F039992 | AGGA | VSNDEINDIRDRLALNSERLARIEERQLTLMGMLEKSLSSFGDLANRVTALEHLKTKVLLVAGGLGAIVSLAWDVLKSRFSGG* |
Ga0103959_11498492 | F001459 | N/A | MRTLRAILAFIRNHQWVNEPAWLEEDEKAWTAFLGTPTGKKLSLILLNLTLRQNSYAVMKEGQKLADACGYAKGFRGCVATLESLATQKLNSAIPGYGDGEDEPVAS* |
Ga0103959_11498497 | F004760 | GAG | MPVYQYEDTRNGCVVELEKTVAERDSVPRYLKRFAVPQKLTLVGVGEPRENPEGVNMTNLMKGYYRQEQKLGSRFKSQYTPDKIKRAAALQRRK* |
⦗Top⦘ |