Scaffold Ga0103959_1051810

Overview

Basic Information

• Taxon OID: 3300007214
• Scaffold ID: Ga0103959_1051810
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE), The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1217
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.409238
  • Long. (^o): 103.907928

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006543	Metagenome / Metatranscriptome	370	Y
F008236	Metagenome / Metatranscriptome	336	Y
F053106	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103959_10518101	F008236	N/A	YASIHDANDKAEAVAAGFKLFAWCDSDQKIAPKRPKRKAAADVWRQALPKLVIIDGDKYITCPEIRRGRGVVTCTPTKGSVDCNLCVKGLANVLFPSH*
Ga0103959_10518103	F053106	GGAG	MGKYYIKSGTLEVTLSKKDSLEAAISGLLLTNKFDTIDEYFYVDQRGYRDYVSADSNTHVIPTKSIVRAAGWELSRGDDE*
Ga0103959_10518104	F006543	GGAG	MQKFSFNVDVVADSLDREVVVESIRECLADALPGDVHASVKAGEVKAFSEQGYKVWRARVTGVTAEAAGD