Scaffold Ga0103959_1036877

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0103959_1036877

Scaffold Ga0103959_1036877

Overview

Basic Information
Taxon OID	3300007214 Open in IMG/M
Scaffold ID	Ga0103959_1036877 Open in IMG/M
Source Dataset Name	Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projects
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE), The Singapore Centre on Environmental Life Sciences Engineering
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4408
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (23.08%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.409238	Long. (^o)	103.907928	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016262	Metagenome / Metatranscriptome	248	Y
F026511	Metagenome / Metatranscriptome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103959_103687712	F026511	N/A	MDTTTLFEFVGEGKMQESNCIAIAFRRPTTGGNPVVNGYPLADGQTLRISQNVGDIDRTQYQINFAAGSGVCYVFRTLNEFCYATG*
Ga0103959_10368772	F016262	N/A	MLKFNKNTLTEIASLGAGAVAGAYVSQKVLTKEDGTYLVGSGKTGKLVADVAPIAVGLFLQGQKNAMLKEAGKGMIAQAAGSLIKANFPALGVTGYDEPVMMSGTDGLDTGVDNPMISGTDNYGTDYSSVDAGEADF*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.