Basic Information | |
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Taxon OID | 3300007214 Open in IMG/M |
Scaffold ID | Ga0103959_1034950 Open in IMG/M |
Source Dataset Name | Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projects |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE), The Singapore Centre on Environmental Life Sciences Engineering |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11648 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (25.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle) |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.409238 | Long. (o) | 103.907928 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F014726 | Metagenome / Metatranscriptome | 260 | Y |
F014837 | Metagenome / Metatranscriptome | 259 | Y |
F016141 | Metagenome / Metatranscriptome | 249 | Y |
F024095 | Metagenome / Metatranscriptome | 207 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0103959_103495012 | F014837 | N/A | MIERNINPKPRFVTLISSVPNTGTFVGVPLATLHKQAFFQFPQDSIVHYISIASTFSITGAFSQAIAALSYNQGANSIQPTLNAGADNFQDDIVWRDELLNPAAGQITTSKFSQIMMNEFFCHTGTGFGLYVNGVGGNCQVNATIAFNPIAEWVNFREPTTGARI* |
Ga0103959_103495013 | F024095 | GGCGG | MDNTNSLPFVYVVASSIAASSTSSTTLIMQADSRFELMGILGTGGQAATTEDGQVAPNNFTLQIRDQTTGRDLMSAPVPQRVLCGNAFNQFLQKRGIVFEPQSNLLFTFTNLTANTNNVTIALHGYKMIL* |
Ga0103959_103495014 | F016141 | AGGA | MTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLATAGTNSVSFFSNPLGAADPAATNLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVPQARQGFTAGTLFTYRGYTAVTDSAMQKLQTVMNSGVLEIRFAQKLYYQIARPFIQCPAGFGIDIQSLASVRNGNAAETQGPDTNWIARPDYRATAVYNIDPIQIIEPEIQIQAAINFPNGNTPNFTGSALDSTSGAVTPAIELGLIFDGYVIRPSQ* |
Ga0103959_103495015 | F014726 | N/A | MGFQSESIISAASQRFGVIDYTRWQAIRWQWYSYITYPAAGASTLTFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQIAENDVDQFTRANINDIDTRATATDYIGGFVQAGVLNFSVGARPFATIPKPFQYAPPPGSPLDLENTFVNQISAAPAPAVGVEQVVGVPWVTQTKMRPNVYFVDPNILIEAEQQFTVTIDFPSGLVPVLATNVINIGGANANPYKVGVILDGLLLRPVQ* |
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