NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0103958_1223588

Scaffold Ga0103958_1223588


Overview

Basic Information
Taxon OID3300007212 Open in IMG/M
Scaffold IDGa0103958_1223588 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Bottom layer) 7 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2130
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.409238Long. (o)103.907928Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097447Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0103958_12235881F097447GGAGGMAIPGVKTLIRDRFYSVSRQDTPVGPRIVAIARRSTASGTGSIADLDVVRTTNEADVISAFGDGSDAHRAYLELILAGAGRIYIVPLPSDTTFNSSTGAVESATYGGSVFDAAFSAAEAAIPDIIVPWGRGWHPDEWAATPSTPERGFYADNSTTVTSNWAYKIAAKVKEISENINPCIAVLGVKPYAGTSESMTPGQVSTHLGLTNLPDRDASSLLKEVGPYVVVVASEVKPVNYESGTTDFGYSNGAAHVAGALSIIPSYSSLVNKALYNVEALRYAPSRTQQSTLGGKGVNTVVVNFNKIPVFGEGLTFAWSTSDYTRLSTKRIVDDATAVVRQACQRFVGEPSNIQTRNAMETAITSGLRGMQIVGALLGSDFTVSYIPNENKAIVDLILTPAFELKEIEVRVAINL*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.