Scaffold Ga0103958_1107153

Overview

Basic Information

• Taxon OID: 3300007212
• Scaffold ID: Ga0103958_1107153
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Bottom layer) 7 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1725
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.409238
  • Long. (^o): 103.907928

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F074820	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103958_11071531	F074820	N/A	MSILAIEDTFVDGSNVTVTAVVEDLRLLYRATHYEPEEWAPALC
Ga0103958_11071533	F001120	GAGG	MTERSAFNFDRTIAGVNITEHGIKSFTKSIRLGPIQFTLNARKSGLLGSISIPGTGLSKRNIKII*
Ga0103958_11071534	F001165	N/A	MSDDLRIPDSVDMQRLASMQLVAKMKESADKYGVGFIGGFIAPNGEKFMMSNMSDEDTQMLLPEDLR*