Basic Information | |
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Taxon OID | 3300007212 Open in IMG/M |
Scaffold ID | Ga0103958_1017256 Open in IMG/M |
Source Dataset Name | Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Bottom layer) 7 sequencing projects |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | The Singapore Centre on Environmental Life Sciences Engineering |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1565 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle) |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.409238 | Long. (o) | 103.907928 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005092 | Metagenome / Metatranscriptome | 412 | Y |
F049499 | Metagenome | 146 | Y |
F058095 | Metagenome / Metatranscriptome | 135 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0103958_10172563 | F049499 | AGG | MTDTIINMDYRLVDTLNADQLETNDLIGLNDEVVKIIEISPLRFGYALTYENEYGEKDIVEIGDDEIFELYILE* |
Ga0103958_10172564 | F058095 | GAGG | MEYNYVLTTSYDGELFSTHRISDFMEAHEAWAKCVDYGNAKEYATYNLTDPTGKMYTKNFYVDGRVSVK* |
Ga0103958_10172566 | F005092 | AGGA | MDKLECALRTIANCDFCYGKGYIGFANGEDYDVEDCECNIYGLILDEDGSVIYDNGLLSEPQLFATMEAN* |
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