NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099832_1039285

Scaffold Ga0099832_1039285


Overview

Basic Information
Taxon OID3300007203 Open in IMG/M
Scaffold IDGa0099832_1039285 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - OCT_B_2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)902
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005746Metatranscriptome391N

Sequences

Protein IDFamilyRBSSequence
Ga0099832_10392851F005746AGGAGGMPSTAYTRRLMAAFPLVSAAYRNLIVEAVDRWVRASGFDWTKERITALVQWLLKLRAGENPSRPPWWADRYLRYAERVATRAPFEKFLQLVQAWRAALTAYGGLKTVPSRKDVEKFERAVGTARVLTVPLPSGRVVEVDTEDWRARFPFRAYFGVSPRDVLPEVRIQRQILPNNPLSLKLTDGKGNYTPVGEELFRDAWWVMQDHILHPPGAVPAYWPMLPVLPDFRPAPGSVRAHGAVYCRVQPDGKARFYYAPPRW
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