Scaffold Ga0103274_1214894

Overview

Basic Information

• Taxon OID: 3300007202
• Scaffold ID: Ga0103274_1214894
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site C) 9 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: National University of Singapore, Singapore-MIT Alliance for Research and Technology, The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5950
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freashwater Reservoir, Singapore (Monthly Sampling)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012107	Metagenome / Metatranscriptome	283	Y
F016639	Metagenome / Metatranscriptome	245	Y
F099203	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103274_121489416	F016639	N/A	MSKQVMISMLRQGNNGNQILSILDTLTSDSVSSFDYIESPMIEQALGLPTLQEIDF*
Ga0103274_12148942	F012107	N/A	MRIDVLCPAAPWENHTTDEDKAYDNAYNLSEEYQCGVDLRYNETGIIFTTVYA*
Ga0103274_12148946	F099203	N/A	MSNYVCITFGPRNDDPAQFWNERTFWDRQSQAEKWGLQCLSIAGTFGYVVIEDCEDSWEIVDECGAPDNAVSISCDRLGTYSVQPAPQLLGV*