Scaffold Ga0103274_1143580

Overview

Basic Information

• Taxon OID: 3300007202
• Scaffold ID: Ga0103274_1143580
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site C) 9 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: National University of Singapore, Singapore-MIT Alliance for Research and Technology, The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2003
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freashwater Reservoir, Singapore (Monthly Sampling)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007110	Metagenome / Metatranscriptome	357	Y
F007305	Metagenome / Metatranscriptome	353	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103274_11435804	F007305	N/A	MKIIRQTIKKAYSHWIPSPLIRCYHYAAAFDGNKMICFTQNNPIKTHAGAYRIGEDFNLPKYKEFPFYHSESHLIAKLLDNYNYIDPNWTICVLRINRKGLILGSKPCENCDRLLNAVGLSDIYYSLDNGNFSDGKENIVVDELTLPMLAV*
Ga0103274_11435805	F007110	AGGAG	MNTSCKYCGDWIDLDRYEFLVETGRPLVCVGCSVEQKAVGFMDWGHKTAPSLVMVPANATETIRKLDRANRRAR*