NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0103273_1190051

Scaffold Ga0103273_1190051


Overview

Basic Information
Taxon OID3300007200 Open in IMG/M
Scaffold IDGa0103273_1190051 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site B) 9 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1697
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freashwater Reservoir, Singapore (Monthly Sampling)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.286816Long. (o)103.77518Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029343Metagenome188Y
F091426Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0103273_11900511F029343N/AMETVQNKGITMYEFARWAALLEAVEIIAEKCEDRGIDFDSPAGMKYIKPLDIQDYVDNRTDTLLMKIQTARNIEKTLINIKNLQIENRLKNFNIID*
Ga0103273_11900513F091426AGGTGGLRTVSKKRKTHKILSEAEYYTGVQTGQQSPETLSAYEYSRDNAPVLSKLSNLKDQQPGGLNPQALPFPMQDAVIQLGNLYLQTLDLKNKAATAGTLPLFKGKEADLKKFRAKLKGIMNAYKELAAELDKFTLAPK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.