Scaffold Ga0103273_1168044

Overview

Basic Information

• Taxon OID: 3300007200
• Scaffold ID: Ga0103273_1168044
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site B) 9 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2380
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freashwater Reservoir, Singapore (Monthly Sampling)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.77518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F011938	Metagenome / Metatranscriptome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103273_11680442	F000671	GAGG	MEKILCYSCNKTKAKLDVKKSSLLPINLLMCETCISSKFEPRWVIILAGRSNGPDHVKEFIIRRRYVGTEVSASELLV*
Ga0103273_11680443	F011938	GGAG	VREYSDVIYIVWLHDEQCYGMLEKLGAFASVVKYNIGKEEVEELVENENFTIVDEIVHQHVEESN*
Ga0103273_11680444	F000473	N/A	MFIDKSSDKLKEHFKYGINQWTGEPNKPVFYNEEMKKKVHQIQKPNMLLMDVVKYPDFLALRLYEDNFLQFEGTKKEMVIDYVSKVKKLIESYGVRCELEGVPSARVF*