NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103273_1070268

Scaffold Ga0103273_1070268


Overview

Basic Information
Taxon OID3300007200 Open in IMG/M
Scaffold IDGa0103273_1070268 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site B) 9 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8655
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freashwater Reservoir, Singapore (Monthly Sampling)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.286816Long. (o)103.77518Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004112Metagenome / Metatranscriptome452Y
F010155Metagenome / Metatranscriptome307Y
F011844Metagenome / Metatranscriptome286Y

Sequences

Protein IDFamilyRBSSequence
Ga0103273_10702682F004112N/AMHLLPREFFEMSPRHFSLMLKGHKERRVDDYRLVRMLMFTMVRLLGDSKSAPKTPEAFWPLQGDEDSKPTDEEYREIFNRLNQWQK*
Ga0103273_10702684F011844N/AMGQVQGSLQNIEIDVAGGSSYKNLVCLRTSSLNTSMDATNEQTNCGVLTSVSEPLMSVDFDAICEVAPSGSQVSYEDLLSAMVNKTLIAVRVQNPTVTGASTGAAYFHAFSGYITDLTWNQSTTEFINFSGTIQSTGALDVIP*
Ga0103273_10702685F010155N/AMKDSANSVRTIYVNALNGNITYNGKNVPVYGQTPFKTLPQHYVIIENITEVGDNTNHTFQNNVEVVIDIYSEQYRVYDNGVVDNIASQVLNILIPDTNVDGFSDADFIVYPMSRTSSRYLPLQNGDNFVARKIITISNLVNQK*
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