NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102978_1208785

Scaffold Ga0102978_1208785


Overview

Basic Information
Taxon OID3300007177 Open in IMG/M
Scaffold IDGa0102978_1208785 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5116
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (35.29%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.286816Long. (o)103.867024Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006260Metagenome / Metatranscriptome377Y
F007859Metagenome / Metatranscriptome343Y
F009604Metagenome / Metatranscriptome315Y
F010081Metagenome / Metatranscriptome308Y
F013524Metagenome / Metatranscriptome270Y
F042296Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0102978_120878511F006260N/AMETELTIKDKVKNPVIIQHDDLKFDGKTITIPTYWVDSLCEYIKDYKTDGELEADIEDYKSFRNFLWDIQEYKNQGN*
Ga0102978_120878514F010081N/AMQNKIDDIIKEHCLKMQEVDKTKSIPMIVKDLDHIVYSMYRDLYGLRDIRSNNYHLNTFTADDKKGHCC*
Ga0102978_120878515F007859AGAAGMKKLLIIALLSTGCTSGMYLRYNYNKALERLPQCSKVHSINNKYITYSMIEQSTNNVYTLHTNVYQAYYNCDGVIYKIVKINAK*
Ga0102978_120878516F042296AGAAGMNLFKSVIKWTGIGLFACFAYAATLPEPIKLYVIYTYKFNERVIEKIYIKKENAQKYCEQFKDSHDYTFEEVTVKE*
Ga0102978_120878517F013524N/AREFTNNNCNTTLDPKLCEDIRYLCDEVERFSREVVKANNFMDEDHITIQRYKKKLENCQKKLSNYEPF*
Ga0102978_12087853F009604N/AMNQCGCGNEIHPERFELGYKVCLSCGDKAAQKNKKYGYMHFGHKTAGSIVVTSKKAVDNYIKVSKRMNKGSNMGYASRLSTSF*
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