Scaffold Ga0102978_1115494

Overview

Basic Information

• Taxon OID: 3300007177
• Scaffold ID: Ga0102978_1115494
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2266
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027828	Metagenome / Metatranscriptome	193	Y
F061794	Metagenome / Metatranscriptome	131	Y
F091925	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102978_11154942	F061794	N/A	MPFTKKFPRSGETKHIRVPVVYADLVLELMELFERRFDIDKGKHLLKKYISNLS*
Ga0102978_11154944	F027828	GGAG	MMLDTVLTIEEILTEKQLLALRDILYFYKEFEMELYNYPSEDTLFTQTQRELFDIFDIK*
Ga0102978_11154945	F091925	N/A	MTSISFTSGELLDIILALEEKENALYLAENYHLSAYYMNLGVQFQKIYDKVQEFVPENRVAHLVLAVN*