Scaffold Ga0102978_1062831

Overview

Basic Information

• Taxon OID: 3300007177
• Scaffold ID: Ga0102978_1062831
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5786
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F003659	Metagenome / Metatranscriptome	474	Y
F004838	Metagenome / Metatranscriptome	421	Y
F022872	Metagenome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102978_106283110	F002287	N/A	MSQVSKLSFVDGKLGGPTSGQQTTRVLFNTIEAPGTTSSLTFFRSFQGLTNGQTNLTQNKLDSMESMVIKTIWLAQFTTGAEARTFGGLVAQTVSIIVGNQTVVKNLPIHFNQGVNGQAYDRLHEGGGAAASTLFGSATQQTIQPIEIRLLTDIVIPPQVAFEVRVDSNGASYGTGAVVCALAGYGKIFSAGNSF*
Ga0102978_106283111	F004838	N/A	MISAQDKILHVANKLGLSSLKDMQASTGAVYDVDTELSGTIFSQAARHANPSVTNINENQFEVNEALLVENITFFVKDASGNILNFQQQYGSGFAIVFDLVIGNKRVMRETPVFAAGSPFTFANTGQTNSTIGEDIAQTYVPRHQVFMEGAGILIPPQVQWYVQYTIYNVVTGAIVAPSDATAIGCYLFGTKVLLNFNTSI*
Ga0102978_10628313	F003659	N/A	MSANDVIGRYLIALEDVPVYDRPNGTRIGEIKKGNSTAEVYSYVERPGGQVWWMFEYTIPGQTPGAYYVLDKKGRFRLSVAAGNTIVTPASLPGVDVFPKGADLKKYAVYGGLALAALLLLRK*
Ga0102978_10628318	F022872	N/A	MSWQIPTEIEKDFKSGKAQYRTFQTGVGGQSILPVPANSYAVIFGYDFSPAGGGFTRTDVLGFGTRLNDVFMRWFETQQISFYTGTDFYPFIHHINVESSIASFQQSDTLVSQMWSIDNTPISRQVYITSSNDVTITVGLILDSDVASANAIPVTNRTPQGLTYGGSGQAVATQTDFGPALTPQQFMQPSPKDYADFAFGLLPANADGQAFATPDLGRGLRDASQFLNSLDPTFRDAAACNYFLNLHYALYTETIPEQRG*
Ga0102978_10628319	F000710	N/A	MISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIRLSSTTSAAPSVAVDAMQLRVTLTINNDVVCDDICAFDLGANAGAGGVTTGFPAYIPFPRALTGQDTILLRVTNSSGASQLLNVTVYYKNEI*