Scaffold Ga0102978_1041732

Overview

Basic Information

• Taxon OID: 3300007177
• Scaffold ID: Ga0102978_1041732
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1836
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001019	Metagenome / Metatranscriptome	804	Y
F004666	Metagenome / Metatranscriptome	428	Y
F084155	Metagenome / Metatranscriptome	112	Y
F095357	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102978_10417321	F095357	AGGAGG	MATSKEIKVGELLANSVEDHWFNPATLAHYLSNQPNWTIDRVMEVVLWIIEKNARIYQAKAGREEISEGLILAYKLDGIVNRIKEANQFNHVKIP*
Ga0102978_10417322	F004666	AGGA	MNKREYLASKGITIGRRGRFSSAATQALREAEQQGIKFTAEAKTPKK*
Ga0102978_10417324	F001019	GGAGG	MNYEPTLEILEVEYSCSPGGVDTYEVYDKDDSDPVSIPIFETESLTEAVQFCYDLGQDFIVRTVAAWHRHEEAEYEAV*
Ga0102978_10417327	F084155	N/A	KNLMYAAEQEFLQAQQVEEDNDYSDAMESMERKYWEGQMDALTHVYALTYQLSFAIQERKKNAN*