NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102977_1210944

Scaffold Ga0102977_1210944


Overview

Basic Information
Taxon OID3300007171 Open in IMG/M
Scaffold IDGa0102977_1210944 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2636
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.286816Long. (o)103.867024Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002333Metagenome569Y
F002738Metagenome / Metatranscriptome533Y
F043890Metagenome / Metatranscriptome155Y
F085585Metagenome / Metatranscriptome111Y
F097198Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0102977_12109441F002738N/AMSIDTYGLPSEQYEEFFEDNVRFAAQLYLKTCNIISAEGAGNVDFKTVLDMYQEAVYATNDDCRKYQKANNPEAIKDTDVFGIYPSREDMMEEIKAVSAKVEALTEYVTELVKVTTKGLE
Ga0102977_12109442F043890N/AMQKTSSWATCNPNSIEKLQINCIDEEDGSMTIHIEWDENDFDLQWWTELGPEGQETFMIDALQKACDCYVD*
Ga0102977_12109444F002333N/AMSTQTQIELNAAQAAIYTRSNIRRAFQDFDDTEVAGIYLRNDDCLVVRRDGSEQAYNRELIKVAFTNYTHRLKDFFSYLGSNYRGPSVWHNNAYILFKGWNYTHALGHLTSHAKLQAHWADKFIHVSDTNKVLHLLQSDQTDLGHLVAPDGLRLSNRPIDLDSDMEADQSTPVVGEPWCSCGSYQRQLSNVSDFASEIQGFKPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWWYAPPVDHINDGRFVLLYTNSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ*
Ga0102977_12109446F097198N/AMLQFEMGPEEAFWQEKMIRSINECNSISELKEMATLLTKIATMRQVAIKGLVKDAMDLMSNQVDRDILNRLKG*
Ga0102977_12109447F085585N/AKLYEKEMSKCLSKALDSEVPLAFNEKFYATTVFIPVLANEMRGANNVEICAIESFEIPDYSSQEDAVTSLGRLSIPDEDRESTWKYQEMFEDYINQHSRQDAQRLGGAYGIKDGVQILPVSRTTDAVDVKALPARDEMTGEDLSL*
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