NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102977_1203087

Scaffold Ga0102977_1203087


Overview

Basic Information
Taxon OID3300007171 Open in IMG/M
Scaffold IDGa0102977_1203087 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1894
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.286816Long. (o)103.867024Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F014847Metagenome / Metatranscriptome259Y
F016528Metagenome / Metatranscriptome246N
F028095Metagenome192Y
F043356Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0102977_12030871F043356N/AMKIDISSIDRTQFMVHEHSLNGEIVHLIQPQHIGTQWRQDNKHLRSVVVNYEEIGRASC
Ga0102977_12030872F028095N/AMTEQIYMKLNDKVKRPTLSKEKINRENKHFKRVVDQYERWCKDGGGYETRETYEDDIIKCLFESDHDGYQLAEFLKKEVYIEPDSELVDILDGVSTVMYSLTKEILGQWTKENFLDIPSDVIGKKVNAKQGYRKYENHYITGIKPETYEVTIAEDTNNNKKGGWVIRYEDITFLD*
Ga0102977_12030873F000962N/AMNIHIPDEIKNKYPHMEFRGKQRIINDRTVIEAYNHATEQNFYYSFDEDFFWFAGQIPDYKLPKVS*
Ga0102977_12030875F014847AGGMEFETNEDILQDLMDNIRNLHEENAKLMQEVEQLKEENKELNRKLKSIQAIFL*
Ga0102977_12030876F016528N/AMINNNELFAKVLAENPLPYRFGDKVNTDRGIGFISGYNFKDREKVWRFTIRPFGLTNYYIDVETVYGKVE*
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