Scaffold Ga0102977_1030154

Overview

Basic Information

• Taxon OID: 3300007171
• Scaffold ID: Ga0102977_1030154
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2282
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022658	Metagenome / Metatranscriptome	213	Y
F032663	Metagenome / Metatranscriptome	179	Y
F057213	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102977_10301541	F057213	N/A	AIAYMARTANNQRSVGNEQPVDLQQPTSRIGRDGVEDNTDLREQFSKLQRDLASKERALRQKELDTEILRNMGDRFDNDLQDYALSKVKSNIQWKRDGTYTIVNSKGQERYGLDGNPLTIAGLIDEVAKGNPKLLKQNNLSSGSGLKPGQSQFAGAPVDAIPDYSKDPAAFDAWAQRMGLGKGTGLKAMKVGASVSTASKKIL*
Ga0102977_10301543	F032663	AGGA	MSVPYQRISNATVADIIFYDPAAERRAAQMNINWDDYFKVGSQEILFAMEFGWWNNYCDTVFGASYYQNLPNGELVSSFNPNLLIKSDTP*
Ga0102977_10301544	F022658	N/A	MAVKIFYESIVSDVSNVNDVDKANYDHALRRYQFEWEKALQLMNFYDLNQNAPNGPTTKLEENWTADVDYFNNDRRYF*