Scaffold Ga0102976_1063575

Overview

Basic Information

• Taxon OID: 3300007169
• Scaffold ID: Ga0102976_1063575
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3405
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024770	Metagenome / Metatranscriptome	204	Y
F044450	Metagenome / Metatranscriptome	154	N
F053995	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102976_10635752	F053995	AGGAG	MALVNRLSKGEVAVGALQVGDNDTVYGIEFGTVAIDPASLNATTRGATTFTLTGAATTDIIIVNPPSTLNDDLIFCGAAVTAADEVTIYLYNPTAGSINQGEATFSYCWIDTTA*
Ga0102976_10635753	F044450	N/A	MKAEILKSMLVDGRKVVAGDIVDVKGWRHAKALARNRYIRLIEDGSATAEISEEKKESKPKAPKKKSAE*
Ga0102976_10635754	F024770	AGGAG	MAVTHARVSVGTTATKLTSDYDGKDGQTINVQNPSGGADVFIGGEGVTTTDYGYLLKADTSFSVELQDDEKLYAVVASSTQTVNIIRQGT*