Scaffold Ga0102976_1049861

Overview

Basic Information

• Taxon OID: 3300007169
• Scaffold ID: Ga0102976_1049861
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8672
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F006842	Metagenome	363	Y
F017469	Metagenome / Metatranscriptome	240	Y
F034906	Metagenome	173	Y
F053128	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102976_104986111	F006618	AGGAG	MSKMKQQLEKEIVITGSREETTGWKRYIYFEYEGNKYEVNLYWEEFNGYDNYWREPNTEPEWVKKWDKETHEGMSFEGYLDELTWERNK*
Ga0102976_104986112	F053128	GGAG	MKGYFVIDNQGTGWKEGYLWKSIKEIADSIRDYDDYKELEVSNLTHSQVCELWDFEYHRITPANCEKYGVRPSELTREKV*
Ga0102976_104986113	F006842	GGAG	MKATPAICGDHLVPITECNCLDYLREIESSAKRLIQLTKEREQLK*
Ga0102976_104986114	F017469	GGAG	MNICQFCGWEVKNFEWYHKYNGAIACDNCLMDSATEREKERANG*
Ga0102976_104986119	F034906	AGG	MNNKQRLKAAADQAVRQRNYQRARQRAFTRLANTYPDTYRAYLEEEKQADEQMGKKWLDLDGNTRITKSRS*