Scaffold Ga0102976_1039018

Overview

Basic Information

• Taxon OID: 3300007169
• Scaffold ID: Ga0102976_1039018
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2885
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y
F040619	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102976_10390184	F003714	N/A	MPNAHHPYTDTVTFAGRPVPLKRPMAVFAAKRLEAILPQIAALNAAGKSQADAAEALETTVTTLRYWLETTGTEWRNLKRRGPYKPRA*
Ga0102976_10390186	F005588	N/A	MPDPSHLPYDPMTIIRPHSMPRGWWLCPWAYAIVLHRAANAVKAYADRLDDIIDLQRGIIEDQSQEIGFLRQRVEDLNDAVIRGKAIVPDATPIHDTE*
Ga0102976_10390188	F040619	N/A	MKKLLNHYHEALHEDGATKVSLQAYVAAGGWVGITYSYEVDGFEVAGSQVPRRV*