Scaffold Ga0102976_1008421

Overview

Basic Information

• Taxon OID: 3300007169
• Scaffold ID: Ga0102976_1008421
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4241
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019119	Metagenome / Metatranscriptome	231	N
F077051	Metagenome / Metatranscriptome	117	Y
F077197	Metagenome / Metatranscriptome	117	N
F096912	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102976_10084211	F096912	N/A	MFTVKLVKRDGKLVYPDDKSKLNYQIFLDKLTDGQQVEVFMGLTSDNGSIAQLAKVHACIRELAKESGYT
Ga0102976_10084213	F077197	AGAAGG	MFLPIEFQDQDGPYFEHLNVTHITRISFINPRNPDAGAKIHLRTGEVLSTRMPFDQLSQAIDEAWESAASLVLSTLLSEKAKLISGSQRPEENSELLEDSEA*
Ga0102976_10084214	F077051	N/A	MTENDLTDLGFNKVEVKDLDSQNGYDYFYYTLEIFDNLTLCSVDSDCVKDDNWYVTNLEWPDQFKLQSPQEVQSFLQAVGYQR*
Ga0102976_10084216	F019119	GAG	MIEYFLGIQLGTYFKMERDIRKEMEALSAQIAEEHYNITNGVDQNLNYLWYMYHKGSKAGMFRPFVYMAELQLLKYMGYINDTEIKNMIRMLESEDQDNLHMVTLSIKNFRELRLQEHGEYSKTNKAYWNVAKNYAFEILNHEIFMQTMAAK*