Scaffold Ga0102976_1006843

Overview

Basic Information

• Taxon OID: 3300007169
• Scaffold ID: Ga0102976_1006843
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6035
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012105	Metagenome	283	N
F036604	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102976_100684311	F036604	GGAGG	MGHLITTAEELAEAIVSDPERVAACLGRINRFGGQVPNCTVLRHSLHVFERIDADVDSSDAARLWALLHDCHEILTGDVVRPYVNARLRMDQQAIDNAIIRRLPLLVPQPESIEWGRVVAADRAVGEWEMLEIGQGRAPYAIYQFAEKSWADLVRGFIERRASK*
Ga0102976_10068439	F012105	GGAGG	MIPLAIRRHRLQDLTLGQSVVLTVPHCEERQIRRGVGTLNADRTDGLRLKTLRTPDGLRVWLVECVEVADRPEWQTGKSRRFPGRDVVAVQKAVVKLNEWARVMRRAYRFRTVVRDGVPIVLKLPKNKTIRIRREAELLRVVKAVERLRAGQGTVVRGVERRDIVRAKWRMKKRQIRFVVRCIGESVWNVERVTE*