Scaffold Ga0099835_104210

Overview

Basic Information

• Taxon OID: 3300007166
• Scaffold ID: Ga0099835_104210
• Source Dataset Name: Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=1 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1135
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park, Wyoming
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040183	Metagenome / Metatranscriptome	162	N
F069055	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099835_1042101	F040183	N/A	VKLKYPFPQRFHYLTVLGKYLTPNTTIVASGANTGPLTANTVCDFVQTPNHKELAVNLTIQAVSGTFSTGQGLTAYFDVLDPVEPQNINVNSSERPPVLELKLNSTAITTAPTTIRLVIANGVATVWINGASTVLGNVNVPYIWQVRFAISGTTPSFSIVGTYEARE*
Ga0099835_1042102	F069055	N/A	CYFHPAANVVAFGSDPISFASGVGTIGHCRPQFTTYPDGVPKIIYNDFAFDQSLKTVMEYIDPQVLRPENHKKIYIVEDNFPNPLFFSTFGRKKLFARLYLAFEPTWSPQNDPQYAVVVQISEIDGNYDADAMTAGLGSFLDANDVGTLVLGTQQPTVTLTGGNVGRMFSYKQVEFSAEDLPAYVGILIRAQSTSNVGPFGVIVLE*