NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079302_1014847

Scaffold Ga0079302_1014847


Overview

Basic Information
Taxon OID3300007165 Open in IMG/M
Scaffold IDGa0079302_1014847 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2025
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070110Metagenome123N
F103250Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0079302_10148474F103250AGGAMQKIEIKTQYGWSTAKIGRYTNGHIGIQLFQDGSPLVKISTNLPDTKIDTREFHFNSNDAGTLKDDVLNSGHFEDTGKSDKSGFCEYPVFRLKDHVEVVEG*
Ga0079302_10148476F070110GAGMGGFYLPITPMFLDDFPIVIWFVRKSRNSYLLFDSANQLVMRRDEKRKKEIY

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