Scaffold Ga0079302_1000046

Overview

Basic Information

• Taxon OID: 3300007165
• Scaffold ID: Ga0079302_1000046
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28063
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (63.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F014487	Metagenome / Metatranscriptome	262	Y
F048158	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079302_10000461	F048158	N/A	LQRKKVEAQPLVKAKGGGLDVEIQRLEDLAASLGESAKDDTRADRSELISNYTKLVEALRRMKGDRPDIDQAEGTMVPVDDADKVLAARDNALVPLLKGMAKRLAPICANRPAVEVEAEVENEVGQIMRQVEAAL*
Ga0079302_100004627	F014487	AGG	MPLLLITLFLCSCSQRPAESTGLPNYDMMQAAEDAGKTPSK*
Ga0079302_100004629	F006891	AGCAG	VSADQVAELSERLALVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVVSTVWELIKRRFSL*