Scaffold Ga0079300_10012559

Overview

Basic Information

• Taxon OID: 3300007162
• Scaffold ID: Ga0079300_10012559
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3153
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y
F049637	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079300_100125591	F036704	N/A	MWIEIDVMLAGSTMDWQELGLDVKHEFVRRMVRIEDIAYVQELVNDIQVMYFYDKSSCLIRGSYQEIRDEL
Ga0079300_100125592	F001775	N/A	MKEMLDDERIRIAILAFIAGVILAFIVYPRPEQETVYKFETKVETDTIYTRVVDTVYVPKMRIKSQILRDTILKEYKPQISLFKTSIPSEYGSTHLSGEVLGEVLKMTATNDFKIPVVTNTITNTETKTIVQKAKGIYLGAGVNSLLDPLAKVSYLDNKYLFQYSYQPVTKVHTLGVSKKLF*
Ga0079300_100125596	F049637	N/A	MTIFKNDALGVPSTLVAIFANVSQVIGLGFVNMFFTWIISILSIVYLIYKIKNEKGKFDAKKDEEGK*
Ga0079300_100125597	F029443	N/A	MTLVDLVKKLKAIQEAHPMIRTFGEGDIYDYVDNGGEIQYPVLWTVVRPSVYNGTTMRYDLVLLFADLLTEDKSNRLQIQSDQLLVALDVLAKLKLDNDYSFNTAPNGAIEFFQERFDDFTAGVSIAIQVSAPMPLNLCAIPTEPAS*