NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099959_1345463

Scaffold Ga0099959_1345463


Overview

Basic Information
Taxon OID3300007160 Open in IMG/M
Scaffold IDGa0099959_1345463 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)631
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005516Metagenome398Y
F032311Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0099959_13454631F005516GAGMKSFIQHLKEFASFSTSNLVFDNNGQGSASSGLKIPISGPMFKRIWPDTIRATVFHTTDLRGLEKLKKLEGGKKTISAFFSMMSRYMEGGIASGGGIVVEMEADVLVSAADDIMSQVDNKGRRWVEMSWFANAQRYGTGPAFGKVERELNDLIRNLVVKHL*
Ga0099959_13454632F032311N/AFPSPNSDMMIHVYLRKMSPPSKKGMMAFNYQLEDK*

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