Scaffold Ga0099959_1122662

Overview

Basic Information

• Taxon OID: 3300007160
• Scaffold ID: Ga0099959_1122662
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1170
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005464	Metagenome / Metatranscriptome	400	Y
F018553	Metagenome / Metatranscriptome	234	Y
F025858	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099959_11226622	F018553	AGG	MLCIPRLRIAILNEEIALWEKRLCDNPDDIPYLGYIRTTLKGRVKDLEEHEKNLTFLSEADKI*
Ga0099959_11226624	F005464	AGGAG	MNIKSKDMHLRVAGWALSLLCMSIGTYFLWPHIHVALLGIVLFYLGIRIFNFSTFEEYKEQRMKLLLKYLE*
Ga0099959_11226625	F025858	N/A	YYDNGVGESKMLNSYGTQVLDHQGNKPDKEYMKKHRPSHREYPTRMYKNFGGWMMWLTCDIKGRSEGL*